Codes and Toolboxes...

This page contains codes, toolboxes and other usefull material for fmri data analysis employed in our studies. All codes are implemented using Matlab and each module resides seperately under Functional Connectivity Library (FCL) directories. Because of the computational complexity some packages are implemented to run on a cluster and indicated as (parallel).

libFCL GUI and Scalable Functional Connectivity Tools are available on demand, a brief introduction of tools (pdf) , for contact please send an e-mail to neuro@ceng.metu.edu.tr

If you use the datasets, codes or results found on this site, please cite the following study:
M. Ozay, I. Oztekin, U. Oztekin, F. T. Yarman Vural, "Modeling cognitive states using machine learning techniques", Neuroinformatics 2011, Boston, MA, USA. [bibtex],[txt],[EndNote]

  • FCL Local Relational Feature (LRF) extraction (includes sample data) [download codes]
  • FCL Local Relational Feature (LRF) extraction (parallel) [download codes]
  • FCL Local Relational Feature (LRF) extraction with functional connectivity (parallel) [download codes]
  • FCL Clustering (external clustering libraries and wrappers) [download codes]
  • FCL Boosting (external boosting libraries and wrappers) [download codes]
  • FCL Core (utility functions, helper and conversion routines) [download codes]
  • FCL Classification (will be added soon...)

  • CEREBRA: fMRI Data Visualization Toolbox [download codes]

    • Additional toolkits and libraries

  • Functional Connectivity Toolbox [project main]
  • Brain Connectivity Toolbox [project main]
  • Princeton Multi Voxel Pattern Analysis (MVPA) Toolbox [project codes]